Mapping the genomic landscape of Prunus spp. with PrunusMap
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Date
2025
Authors
Ksouri, NajlaMoreno, Maria Angeles
Contreras Moreira, Bruno
Gogorcena Aoiz, Yolanda
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Abstract
Next-generation sequencing has fueled significant advancement in plant breeding tools, such as genome-wide association studies and single-nucleotide polymorphism (SNP) analysis. In this dynamic landscape, plant databases housing SNP markers have evolved into hubs facilitating breeding initiatives and genomic research. PrunusMap, accessible at https://prunusmap.eead.csic.es is an open-source Web application tailored for the Prunus community. Featuring a user-friendly interface, PrunusMap empowers users to seamlessly align and locate markers across multiple genome versions of Prunus species and cultivars, supporting different queries and formats. Beyond locating marker positions, it provides a comprehensive list of annotated nearby genes and proteins. This streamlined process, driven by four intuitive features ‘Find markers’, ‘Align sequences’, ‘Align proteins’, and ‘Locate by position’, significantly reduces workload and boosts efficiency, particularly for users with limited bioinformatics expertise. Moreover, PrunusMap’s versatility is underscored by its commitment to incorporate additional Prunus genome sequences, annotations, and markers upon user request.
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Bibliographic citation
Ksouri, Najla; Moreno, María Ángeles; Contreras-Moreira, Bruno; Gogorcena, Yolanda. Mapping the genomic landscape of Prunus spp. with PrunusMap
Horticulture Research. 2024, 12, 2: uhae301
AGROVOC subjects
PrunusPolimorfismo de un solo nucleótido
Secuenciación de alto rendimiento
Bases de datos
Mapeo de asociación
Metodología
Other field subjects
Bases de datosMapeo de asociación
Polimorfismo De Un Solo Nucleótido
Prunus
Secuenciación de alto rendimiento
Sponsorship
The authors would like to thank Dr Veronica Guajardo for
providing data on ‘Adafuel’ SNPs and Bixente Sehabiague for
his technical assistance. This work was funded by CSIC [grants
2020AEP119 & FAS2022_052], the Spanish Research Agency
[grants AGL2017-83358-R & PID2023-146749OB-I00, funded by
MCIN/AEI/10.13039/501100011033 ‘A way of making Europe’] and
the Government of Aragón [grants A44, A09_23R, A10_23R, and
PhD contract to Najla Ksouri 2018–2023], which were cofinanced
with FEDER funds